About Enhancer
| Enhancer ID: | E_01058 |
| Species: | Homo sapiens |
| Position : | chr10:105668100-105669000   |
| Year: | 2022 |
| Title: | Functional annotation and investigation of the 10q24.33 melanoma risk locus identifies a common variant that influences transcriptional regulation of OBFC1. |
| Genome Build: | hg19 |
| Enhancer Type: | Enhancer |
| Condition: | Disease |
| Disease Name: | cutaneous melanoma |
| PMID: | 34605909 |
| MONDO: | MONDO:0005012 |
| Tissue: | zone of skin |
| Tissue Ontology ID: | UBERON:0000014 |
| Cell Source: | CJM [Human OCSCC] |
| CVCL ID: | CVCL_8663 |
| Cell Type: | melanoma cell |
| Experiment Type: | Enhancer activity assay, Chromatin interaction assay, Functional perturbation assay, TF binding assay |
| High Throughput Method: | ChIP-seq; RNA-seq; Hi-C; 3C |
| Low Throughput Method: | Luciferase Reporter Assay, 3C; CRISPR Knockout; RT-RT-qPCR; Western blot; ChIP-RT-qPCR; CRISPR-Cas9 |
About Target Gene
| Target gene : | STN1 |
About TF
| TF name : | MEOX2 |
About Regulatory State
| Regulatory State : | Active |
Upstream Pathway Annotation of TF
| GeneName | Pathway Name | Source | Gene Number |
|---|
Enhancer Associated Network
Overlapping Enhancers (hg19)
6 found
| Enhancer ID | Position | Tissue | Cell | Disease |
|---|---|---|---|---|
| E_01061 | chr10:105664375-105670803 | skin | melanoma tissue | cutaneous malignant melanoma |
| E_01063 | chr10:105664375-105670803 | skin | epithelial cell line | cutaneous malignant melanoma |
| E_01046 | chr10:105668100-105669000 | NA | neural crest cell | cutaneous melanoma |
| E_01057 | chr10:105668100-105669000 | zone of skin | melanoma cell | cutaneous melanoma |
| E_01059 | chr10:105668100-105669000 | zone of skin | melanoma cell | cutaneous melanoma |
| E_01060 | chr10:105668100-105669000 | neural crest | neural crest cell | NA |
Expression of Target Genes for the Enhancer