About Enhancer
| Enhancer ID: | E_00402 |
| Species: | Homo sapiens |
| Position : | chr8:128889122-128889450   |
| Year: | 2016 |
| Title: | Genetic variation at the 8q24.21 renal cancer susceptibility locus affects HIF binding to a MYC enhancer. |
| Genome Build: | hg19 |
| Enhancer Type: | Enhancer |
| Condition: | Disease |
| Disease Name: | clear cell renal carcinoma |
| PMID: | 27774982 |
| MONDO: | MONDO:0005005 |
| Tissue: | kidney |
| Tissue Ontology ID: | UBERON:0002113 |
| Cell Source: | RCC4 |
| Cell Type: | renal epithelial cell |
| Experiment Type: | Disease-risk enhancer; enhancer-promoter interaction; allele-specific TF binding; endogenous genome editing |
| High Throughput Method: | HIF ChIP-seq; DNase/chromatin profiling; cancer genetic association |
| Low Throughput Method: | Capture-C/chromatin-conformation assay; allele-specific ChIP; luciferase; CRISPR HRE editing; RT-qPCR |
About Target Gene
| Target gene : | PVT1 |
About TF
| TF name : | ARNT |
About Regulatory State
| Regulatory State : | Active |
Upstream Pathway Annotation of TF
| GeneName | Pathway Name | Source | Gene Number |
|---|---|---|---|
| ARNT | AndrogenReceptor | netpath | 167 |
| ARNT | HIF-1-alpha transcription factor network | pid | 67 |
| ARNT | HIF-2-alpha transcription factor network | pid | 34 |
| ARNT | Hypoxia response via HIF activation | panther | 16 |
| ARNT | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha | pid | 19 |
| ARNT | Notch-mediated HES/HEY network | pid | 48 |
| ARNT | Regulation of gene expression by Hypoxia-inducible Factor | reactome | 10 |
| ARNT | Pathways in cancer | kegg | 321 |
| ARNT | Renal cell carcinoma | kegg | 65 |
Enhancer Associated Network
Overlapping Enhancers (hg19)
18 found
| Enhancer ID | Position | Tissue | Cell | Disease |
|---|---|---|---|---|
| E_02292 | chr8:128750000-129000000 | breast | malignant cell | prostate cancer |
| E_00009 | chr8:128889122-128889450 | kidney | renal cell carcinoma cell | renal cell carcinoma |
| E_00014 | chr8:128889122-128889450 | kidney | clear cell renal cell carcinoma cell of renal tubular origin | Clear cell renal cell carcinoma |
| E_00015 | chr8:128889122-128889450 | kidney | clear cell renal cell carcinoma cell of renal tubular origin | Clear cell renal cell carcinoma |
| E_00016 | chr8:128889122-128889450 | kidney | clear cell renal cell carcinoma cell / malignant renal epithelial cell | clear cell renal cell carcinoma |
| E_00047 | chr8:128889122-128889450 | kidney | clear cell renal cell carcinoma cell / malignant renal epithelial cell | clear cell renal cell carcinoma |
| E_00050 | chr8:128889122-128889450 | kidney | clear cell renal cell carcinoma cell of renal tubular origin | Clear cell renal cell carcinoma |
| E_00051 | chr8:128889122-128889450 | kidney | clear cell renal cell carcinoma cell of renal tubular origin | Clear cell renal cell carcinoma |
| E_00273 | chr8:128889122-128889450 | kidney | renal cell carcinoma cell | renal cell carcinoma |
| E_00374 | chr8:128889122-128889450 | kidney | renal cell carcinoma cell | renal cell carcinoma |
| E_00401 | chr8:128889122-128889450 | kidney | renal epithelial cell | clear cell renal carcinoma |
| E_00403 | chr8:128889122-128889450 | kidney | renal epithelial cell | clear cell renal carcinoma |
| E_00404 | chr8:128889122-128889450 | kidney | renal epithelial cell | clear cell renal carcinoma |
| E_00405 | chr8:128889122-128889450 | kidney | renal epithelial cell | clear cell renal carcinoma |
| E_00406 | chr8:128889122-128889450 | kidney | renal epithelial cell | clear cell renal carcinoma |
| E_00407 | chr8:128889122-128889450 | kidney | renal epithelial cell | clear cell renal carcinoma |
| E_00408 | chr8:128889122-128889450 | kidney | renal epithelial cell | clear cell renal carcinoma |
| E_00409 | chr8:128889122-128889450 | kidney | renal epithelial cell | clear cell renal carcinoma |
Expression of Target Genes for the Enhancer