Sample overview

Sample ID: Sample_0456
Biosample name: posterior superior temporal cortex
Biosample type: Other
Tissue type: Brain
Cancer type: Other
Region number: 15519
Length: 9746.074 kb
GEO/SRA ID: SRR5367717
Mean insert size: --
Standard deviation: --
TSS enrichment score: 7.60283
FRiP: 0.08463
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.

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Accessible chromatin region of posterior superior temporal cortex

Use these accessible chromatin regions to analyze or download

TF footprint of posterior superior temporal cortex


Peak annotation visualization of posterior superior temporal cortex

Plot A

Plot B

Plot A: a pie chart of annotated genomic features.
Note A: the proportion of annotating genomic region (Promoter, 5'UTR, 3'UTR, Exon, Intron, Downstream and Intergenic).
Plot B: a heatmap of peaks binding to TSS region.
Note B: the profile of ATAC peaks binding to TSS region (+/- 1kb).

Software and parameters used

Read mapping: bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing: picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling: macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter: trim_galore --phred33 --stringency 3 --length 20