Analysis


Parameter explanation:
1) Biosample name: Biosample name is made of cell/tissue/cell line name, treatment condition, processing time, etc.
2) Sample ID: Sample ID in ATACdb.

Analysis of differential-overlapping accessible chromatin region

Function introduction:
Users can submit the ‘Biosample name’s of interest, ATACdb analyze differential and overlapping accessible chromatin regions between two samples. 

For example

Parameter explanation:
1) TF name: TF official name.
2) Window length: Extend the length of TF binding sites.

Analysis of overlapping accessible chromatin regions bound by two TFs

Function introduction:
Users can submit TF name of interest and expand window length of the binding sites of two TFs. ATACdb will analyze overlapping accessible chromatin regions bound by two TFs.