Sample overview

Sample ID: Sample_1041
Biosample name: H1
Biosample type: Cell Line
Tissue type: Embryo
Cancer type: Normal
Region number: 1
Length: 0.741 kb
GEO/SRA ID: SRR3471193
Mean insert size: --
Standard deviation: --
TSS enrichment score: 1.00000
FRiP: 0.00050
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.

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TF footprint of H1


Peak annotation visualization of H1

Plot A

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Plot B

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Plot A: - -
Note A: - -
Plot B: - -
Note B: - -

Software and parameters used

Read mapping: bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing: picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling: macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter: trim_galore --phred33 --stringency 3 --length 20