SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_04_000200006
Species: Human
Data source: NGDC GSA
Biosample type: Cell line
Tissue type: Blood
Biosample name: cold shocked K562
Genomic region: chr12:54276481-54313159
Size: 36678
Super-enhancer rank 6
Number of SE elements: 1
ChIP density(Case|Control): 221028.9636|7119.1998
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NFE2 ;
ROSE Overlap CBX5 ; HNRNPA1 ; NFE2 ;
ROSE Proximal COPZ1 ; CBX5 ; MIR3198-2 ; LOC102724050 ; MIR148B ; NFE2 ;
ROSE Closest NFE2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA CBX5 ; COPZ1 ; ZNF385A ; NFE2 ; LOC102724050 ; HNRNPA1 ; MIR3198-2 ; MIR148B ; GPR84 ;

Network diagram of super-enhancer and associated genes

Expression of SE_04_000200006 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers