SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_275500500
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO2 (IDH1-R132H)
Genomic region: chr12:113213494-113247681
Size: 34187
Super-enhancer rank 500
Number of SE elements: 5
ChIP density(Case|Control): 43796.9657|2762.3096
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TPCN1 ;
ROSE Overlap TPCN1 ; IQCD ;
ROSE Proximal MIR6762 ; RITA1 ; DDX54 ; TPCN1 ;
ROSE Closest TPCN1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_275500500 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers