SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_275500005
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO2 (IDH1-R132H)
Genomic region: chr3:189961320-190131482
Size: 170162
Super-enhancer rank 5
Number of SE elements: 23
ChIP density(Case|Control): 307925.1552|20147.1808
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: P3H2-AS1 ;
ROSE Overlap P3H2-AS1 ; P3H2 ;
ROSE Proximal ;
ROSE Closest P3H2-AS1 ;
Lasso ;
PreSTIGE ;
ABC CLDN1 ; CLDN16 ; IL1RAP ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_275500005 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers