SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_270300490
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_serumWD_back3h
Genomic region: chr7:5592830-5609048
Size: 16218
Super-enhancer rank 490
Number of SE elements: 4
ChIP density(Case|Control): 25233.5862|6182.3016
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: FSCN1 ;
ROSE Overlap FSCN1 ;
ROSE Proximal ;
ROSE Closest FSCN1 ;
Lasso ;
PreSTIGE ;
ABC ZNF12 ; ZNF316 ; C7orf26 ; ZDHHC4 ; KDELR2 ; DAGLB ; CYTH3 ; RAC1 ; FAM220A ; WIPI2 ; TNRC18 ; FBXL18 ; LOC221946 ; ACTB ; FSCN1 ; RNF216 ; RBAK ; RBAK-RBAKDN ; RNF216P1 ; ZNF815P ; PMS2 ; AIMP2 ; EIF2AK1 ; AP5Z1 ; FOXK1 ; USP42 ; CCZ1 ; CCZ1B ; LOC100131257 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_270300490 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers