SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269900957
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr1:11787823-11803664
Size: 15841
Super-enhancer rank 957
Number of SE elements: 3
ChIP density(Case|Control): 21231.6923|3478.6836
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CLCN6 ;
ROSE Overlap MTHFR ; C1orf167 ;
ROSE Proximal LOC102724659 ; NPPA ; NPPA-AS1 ; CLCN6 ;
ROSE Closest CLCN6 ;
Lasso ;
PreSTIGE ;
ABC AGTRAP ; FBXO2 ; FBXO44 ; FBXO6 ; MAD2L2 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900957 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers