SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269900838
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr9:33228919-33235515
Size: 6596
Super-enhancer rank 838
Number of SE elements: 3
ChIP density(Case|Control): 23191.536|3162.782
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SPINK4 ;
ROSE Overlap ;
ROSE Proximal SPINK4 ; CHMP5 ; BAG1 ;
ROSE Closest SPINK4 ;
Lasso ;
PreSTIGE ;
ABC SMU1 ; SPINK4 ; BAG1 ; CHMP5 ; NOL6 ; AQP3 ; NFX1 ; B4GALT1 ; B4GALT1-AS1 ; DNAJA1 ; APTX ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900838 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers