SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900831
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr19:1251565-1267004
Size: 15439
Super-enhancer rank 831
Number of SE elements: 4
ChIP density(Case|Control): 26098.0856|5896.1541
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CIRBP ;
ROSE Overlap MIDN ;
ROSE Proximal C19orf24 ; CIRBP ; CIRBP-AS1 ; ATP5D ; STK11 ; CBARP ; EFNA2 ;
ROSE Closest CIRBP ;
Lasso ;
PreSTIGE ;
ABC CNN2 ; TMEM259 ; WDR18 ; REEP6 ; ARID3A ; KISS1R ; R3HDM4 ; ADAMTSL5 ; MED16 ; MBD3 ; AZU1 ; PTBP1 ; MISP ; UQCR11 ; TCF3 ; CIRBP-AS1 ; C19orf24 ; MUM1 ; NDUFS7 ; CIRBP ; MIDN ; ATP5D ; CBARP ; STK11 ; SBNO2 ; GPX4 ; GAMT ; DAZAP1 ; RPS15 ; C19orf25 ; PCSK4 ; POLR2E ; ARHGAP45 ; ABCA7 ; DOT1L ; PLEKHJ1 ; SF3A2 ; OAZ1 ; LSM7 ; SPPL2B ; TIMM13 ; LMNB2 ; LINC01775 ; SLC39A3 ; SGTA ; THOP1 ; ZNF555 ; ZNF57 ; ZNF77 ; TLE6 ; AES ; GNA11 ; FSTL3 ; RNF126 ; FGF22 ; POLRMT ; BSG ; CDC34 ; TPGS1 ; MIER2 ; PLPP2 ; IZUMO4 ; AP3D1 ; BTBD2 ; CSNK1G2 ; SCAMP4 ; ADAT3 ; ABHD17A ; KLF16 ; MKNK2 ; MOB3A ; REXO1 ; ATP8B3 ; ZNF554 ; GNG7 ; PRTN3 ; CFD ; AMH ; MEX3D ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900831 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers