SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900667
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr7:5629783-5647240
Size: 17457
Super-enhancer rank 667
Number of SE elements: 3
ChIP density(Case|Control): 30726.0657|7555.3896
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: FSCN1 ;
ROSE Overlap RNF216 ;
ROSE Proximal FSCN1 ; RNF216-IT1 ;
ROSE Closest RNF216-IT1 ;
Lasso ;
PreSTIGE ;
ABC FSCN1 ; CCZ1 ; PMS2 ; AIMP2 ; EIF2AK1 ; USP42 ; CYTH3 ; FAM220A ; RAC1 ; DAGLB ; KDELR2 ; ZDHHC4 ; C7orf26 ; ZNF316 ; ZNF12 ; CCZ1B ; TNRC18 ; WIPI2 ; RBAK ; LOC100131257 ; RBAK-RBAKDN ; RNF216P1 ; AP5Z1 ; FOXK1 ; FBXL18 ; LOC101927391 ; LOC221946 ; ACTB ; MIOS ; RNF216 ; ZNF815P ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900667 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers