SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900557
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr19:1746481-1749093
Size: 2612
Super-enhancer rank 557
Number of SE elements: 1
ChIP density(Case|Control): 27390.4768|1643.9928
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ATP8B3 ;
ROSE Overlap ;
ROSE Proximal ONECUT3 ;
ROSE Closest ONECUT3 ;
Lasso ;
PreSTIGE ;
ABC C19orf25 ; RPS15 ; DAZAP1 ; GAMT ; NDUFS7 ; MUM1 ; AZU1 ; RNF126 ; MIER2 ; SLC39A3 ; SGTA ; THOP1 ; ZNF555 ; TLE6 ; ATP8B3 ; TCF3 ; UQCR11 ; MBD3 ; ADAMTSL5 ; AP3D1 ; BTBD2 ; SCAMP4 ; ADAT3 ; ABHD17A ; CSNK1G2 ; KLF16 ; REXO1 ; REEP6 ; PCSK4 ; MEX3D ; ZNF554 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900557 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers