SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900539
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr2:200862149-200867686
Size: 5537
Super-enhancer rank 539
Number of SE elements: 2
ChIP density(Case|Control): 28958.51|2535.946
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CLK1 ;
ROSE Overlap CLK1 ;
ROSE Proximal CLK1 ; RNU6-31P ; PPIL3 ; BZW1 ; NIF3L1 ; LOC101927795 ;
ROSE Closest CLK1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900539 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers