SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900413
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr1:149860107-149863153
Size: 3046
Super-enhancer rank 413
Number of SE elements: 1
ChIP density(Case|Control): 34090.2228|3014.9308
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HIST2H3C ;
ROSE Overlap HIST2H4A ;
ROSE Proximal HIST2H4B ; BOLA1 ; HIST2H2AA3 ; HIST2H2BF ; HIST2H3D ; HIST2H3A ; HIST2H3C ; HIST2H2AA4 ; HIST2H2AB ; HIST2H2BE ; HIST2H2AC ; HIST2H2BC ; SV2A ;
ROSE Closest HIST2H3C ;
Lasso ;
PreSTIGE ;
ABC BOLA1 ; HIST2H3D ; HIST2H2BE ; HIST2H2AC ; HIST2H2AB ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900413 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers