SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900370
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr16:3020333-3024428
Size: 4095
Super-enhancer rank 370
Number of SE elements: 1
ChIP density(Case|Control): 35814.87|2905.4025
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: THOC6 ;
ROSE Overlap THOC6 ; TNFRSF12A ; HCFC1R1 ;
ROSE Proximal LOC100128770 ; CLDN9 ; PKMYT1 ; IL32 ; MMP25 ; MMP25-AS1 ; CLDN6 ; LOC101929613 ; LINC00514 ; HCFC1R1 ; CCDC64B ;
ROSE Closest THOC6 ;
Lasso ;
PreSTIGE ;
ABC PAQR4 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900370 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers