SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900345
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr20:19974223-19994630
Size: 20407
Super-enhancer rank 345
Number of SE elements: 3
ChIP density(Case|Control): 38981.4514|4754.831
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NAA20 ;
ROSE Overlap RIN2 ;
ROSE Proximal NAA20 ;
ROSE Closest NAA20 ;
Lasso ;
PreSTIGE ;
ABC CFAP61 ; NAA20 ; SEC23B ; LOC100270804 ; DTD1 ; SMIM26 ; RIN2 ; LINC00652 ; POLR3F ; LINC00493 ; KIZ ; RALGAPA2 ; DZANK1 ; LOC100130264 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900345 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers