SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900321
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr1:201259142-201276180
Size: 17038
Super-enhancer rank 321
Number of SE elements: 4
ChIP density(Case|Control): 44704.3044|9169.8516
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PKP1 ;
ROSE Overlap ;
ROSE Proximal PKP1 ;
ROSE Closest PKP1 ;
Lasso ;
PreSTIGE ;
ABC PKP1 ; LAD1 ; TNNI1 ; TNNT2 ; IGFN1 ; TMEM9 ; ASCL5 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900321 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers