SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900277
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr3:193858293-193884016
Size: 25723
Super-enhancer rank 277
Number of SE elements: 4
ChIP density(Case|Control): 43649.3587|5576.7464
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DPPA2P3 ;
ROSE Overlap ;
ROSE Proximal ;
ROSE Closest DPPA2P3 ;
Lasso ;
PreSTIGE ;
ABC MB21D2 ; OPA1 ; LINC02026 ; LINC02028 ; HES1 ; LINC00887 ; LRRC15 ; GP5 ; LINC00884 ; TMEM44-AS1 ; TMEM44 ; LSG1 ; FAM43A ; XXYLT1-AS1 ; XXYLT1 ; ACAP2 ; PPP1R2 ; APOD ; XXYLT1-AS2 ; ATP13A5-AS1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900277 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers