SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269301109
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr20:5060930-5080847
Size: 19917
Super-enhancer rank 1109
Number of SE elements: 4
ChIP density(Case|Control): 25890.1083|1929.9573
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TMEM230 ;
ROSE Overlap ;
ROSE Proximal CDS2 ; PCNA-AS1 ; PCNA ; TMEM230 ;
ROSE Closest TMEM230 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269301109 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers