SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269300889
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr4:47206050-47223739
Size: 17689
Super-enhancer rank 889
Number of SE elements: 3
ChIP density(Case|Control): 28700.4025|1565.4765
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GABRB1 ;
ROSE Overlap GABRB1 ;
ROSE Proximal ;
ROSE Closest GABRB1 ;
Lasso ;
PreSTIGE ;
ABC LOC101927157 ; GABRB1 ; NFXL1 ; NIPAL1 ; TEC ; ATP10D ; COMMD8 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300889 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers