SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300843
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr9:33316044-33333830
Size: 17786
Super-enhancer rank 843
Number of SE elements: 5
ChIP density(Case|Control): 29755.978|1641.6478
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NFX1 ;
ROSE Overlap NFX1 ;
ROSE Proximal ;
ROSE Closest NFX1 ;
Lasso ;
PreSTIGE ;
ABC PTENP1 ; PTENP1-AS ; ANXA2P2 ; ANKRD18B ; SUGT1P1 ; NOL6 ; AQP3 ; NFX1 ; CHMP5 ; BAG1 ; SPINK4 ; B4GALT1 ; B4GALT1-AS1 ; DNAJA1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300843 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers