SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300721
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr1:203505684-203537865
Size: 32181
Super-enhancer rank 721
Number of SE elements: 6
ChIP density(Case|Control): 34758.6981|3617.1444
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ATP2B4 ;
ROSE Overlap OPTC ;
ROSE Proximal PRELP ;
ROSE Closest OPTC ;
Lasso ;
PreSTIGE ;
ABC LINC00303 ; SNRPE ; ZBED6 ; ZC3H11A ; ATP2B4 ; PRELP ; SOX13 ; FMOD ; BTG2 ; LINC01136 ; CHI3L1 ; ADORA1 ; PPFIA4 ; CYB5R1 ; ADIPOR1 ; KLHL12 ; LOC148709 ; PCAT6 ; ETNK2 ; KISS1 ; GOLT1A ; NFASC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300721 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers