SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300680
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr1:94284511-94335921
Size: 51410
Super-enhancer rank 680
Number of SE elements: 10
ChIP density(Case|Control): 37837.76|5521.434
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ARHGAP29 ;
ROSE Overlap ;
ROSE Proximal ARHGAP29 ;
ROSE Closest ARHGAP29 ;
Lasso ;
PreSTIGE ;
ABC BTBD8 ; RPAP2 ; GLMN ; RPL5 ; FAM69A ; MTF2 ; TMED5 ; EPHX4 ; DNTTIP2 ; GCLM ; ARHGAP29 ; ABCD3 ; F3 ; SLC44A3-AS1 ; SLC44A3 ; CCDC18 ; CCDC18-AS1 ; DR1 ; FNBP1L ; LOC100129046 ; LOC101928118 ; RWDD3 ; BCAR3 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300680 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers