SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300673
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr6:3796212-3845174
Size: 48962
Super-enhancer rank 673
Number of SE elements: 8
ChIP density(Case|Control): 37690.9476|5111.6328
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PXDC1 ;
ROSE Overlap ;
ROSE Proximal PXDC1 ; FAM50B ;
ROSE Closest FAM50B ;
Lasso ;
PreSTIGE ;
ABC PPP1R3G ; LOC100507506 ; ECI2 ; PRPF4B ; FAM50B ; PXDC1 ; BPHL ; LOC101927759 ; LOC100507194 ; HTATSF1P2 ; CDYL ; PSMG4 ; TUBB2B ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300673 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers