SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269300552
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr1:203626275-203694044
Size: 67769
Super-enhancer rank 552
Number of SE elements: 17
ChIP density(Case|Control): 42674.1393|6099.21
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ATP2B4 ;
ROSE Overlap ATP2B4 ;
ROSE Proximal SNORA77 ; LINC00260 ; ATP2B4 ;
ROSE Closest ATP2B4 ;
Lasso ;
PreSTIGE ;
ABC ATP2B4 ; ADIPOR1 ; KLHL12 ; RABIF ; CYB5R1 ; LOC100506747 ; TMEM183A ; TMEM183B ; PPFIA4 ; ADORA1 ; CHI3L1 ; LINC01136 ; BTG2 ; FMOD ; PRELP ; ZC3H11A ; ZBED6 ; SNRPE ; LINC00303 ; LOC148709 ; PCAT6 ; SOX13 ; ETNK2 ; KISS1 ; NFASC ; GOLT1A ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300552 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers