SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300396
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr3:27520872-27633865
Size: 112993
Super-enhancer rank 396
Number of SE elements: 17
ChIP density(Case|Control): 51705.5968|7604.4289
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SLC4A7 ;
ROSE Overlap ;
ROSE Proximal SLC4A7 ;
ROSE Closest SLC4A7 ;
Lasso ;
PreSTIGE ;
ABC NEK10 ; SLC4A7 ; CMC1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300396 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers