SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269300212
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr4:41141233-41217562
Size: 76329
Super-enhancer rank 212
Number of SE elements: 14
ChIP density(Case|Control): 67810.6836|6052.8897
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: APBB2 ;
ROSE Overlap APBB2 ;
ROSE Proximal UCHL1 ; APBB2 ; UCHL1-AS1 ;
ROSE Closest APBB2 ;
Lasso ;
PreSTIGE ;
ABC APBB2 ; NSUN7 ; TMEM33 ; UCHL1-AS1 ; UCHL1 ; LIMCH1 ; CHRNA9 ; ATP8A1 ; SLC30A9 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300212 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers