SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300189
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr9:4257717-4303666
Size: 45949
Super-enhancer rank 189
Number of SE elements: 6
ChIP density(Case|Control): 70416.8425|5555.2341
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GLIS3 ;
ROSE Overlap GLIS3 ;
ROSE Proximal ;
ROSE Closest GLIS3 ;
Lasso ;
PreSTIGE ;
ABC PDCD1LG2 ; RIC1 ; ERMP1 ; KIAA2026 ; RANBP6 ; CD274 ; PLGRKT ; INSL4 ; JAK2 ; RCL1 ; AK3 ; CDC37L1 ; CDC37L1-AS1 ; SPATA6L ; PLPP6 ; SLC1A1 ; GLIS3-AS1 ; RFX3 ; PUM3 ; VLDLR-AS1 ; VLDLR ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300189 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers