SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300123
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chrX:13357595-13434930
Size: 77335
Super-enhancer rank 123
Number of SE elements: 12
ChIP density(Case|Control): 83490.866|4926.2395
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LINC01203 ;
ROSE Overlap ;
ROSE Proximal LINC01203 ; GS1-600G8.3 ; ATXN3L ;
ROSE Closest LINC01203 ;
Lasso ;
PreSTIGE ;
ABC RAB9A ; MSL3 ; PRPS2 ; TMSB4X ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300123 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers