SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269300080
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr7:22560106-22611972
Size: 51866
Super-enhancer rank 80
Number of SE elements: 7
ChIP density(Case|Control): 100153.246|5326.6382
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC100506178 ;
ROSE Overlap LOC100506178 ;
ROSE Proximal ;
ROSE Closest LOC100506178 ;
Lasso ;
PreSTIGE ;
ABC LOC100506178 ; LOC401312 ; IL6 ; LOC541472 ; TOMM7 ; FAM126A ; CDCA7L ; SP4 ; SP8 ; KLHL7-AS1 ; KLHL7 ; NUPL2 ; GPNMB ; MALSU1 ; IGF2BP3 ; ABCB5 ; RPS2P32 ; TRA2A ; CCDC126 ; FAM221A ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300080 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers