SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300057
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr5:172853279-172933068
Size: 79789
Super-enhancer rank 57
Number of SE elements: 13
ChIP density(Case|Control): 116236.6152|10372.57
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ERGIC1 ;
ROSE Overlap ERGIC1 ;
ROSE Proximal LOC100268168 ; RPL26L1 ;
ROSE Closest ERGIC1 ;
Lasso ;
PreSTIGE ;
ABC NEURL1B ; SH3PXD2B ; MSX2 ; LINC01411 ; HMP19 ; CPEB4 ; LINC01484 ; BOD1 ; STC2 ; BNIP1 ; UBTD2 ; STK10 ; CREBRF ; ATP6V0E1 ; RPL26L1 ; LOC100268168 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300057 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers