SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269300011
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-R132H)
Genomic region: chr11:12109504-12238836
Size: 129332
Super-enhancer rank 11
Number of SE elements: 23
ChIP density(Case|Control): 212311.4112|13709.192
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR6124 ;
ROSE Overlap MICAL2 ; MIR6124 ;
ROSE Proximal MICAL2 ; MICALCL ;
ROSE Closest MIR6124 ;
Lasso ;
PreSTIGE ;
ABC MICAL2 ; RNF141 ; GALNT18 ; SPON1 ; USP47 ; MICALCL ; MRVI1-AS1 ; PARVA ; BTBD10 ; TEAD1 ; ARNTL ; FAR1 ; LYVE1 ; MRVI1 ; AMPD3 ; CTR9 ; DKK3 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269300011 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers