SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269200504
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-WT (IDH1-R132H)
Genomic region: chr6:11187319-11225331
Size: 38012
Super-enhancer rank 504
Number of SE elements: 7
ChIP density(Case|Control): 35731.28|3884.8264
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NEDD9 ;
ROSE Overlap NEDD9 ;
ROSE Proximal NEDD9 ;
ROSE Closest NEDD9 ;
Lasso ;
PreSTIGE ;
ABC NEDD9 ; SMIM13 ; TMEM170B ; ELOVL2 ; SYCP2L ; TMEM14B ; TMEM14C ; PAK1IP1 ; C6orf52 ; HIPSTR ; GCNT2 ; TFAP2A-AS1 ; LINC00518 ; MIR5689HG ; TFAP2A ; EDN1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269200504 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers