SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269200475
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-WT (IDH1-R132H)
Genomic region: chr3:45623983-45669242
Size: 45259
Super-enhancer rank 475
Number of SE elements: 11
ChIP density(Case|Control): 35514.7373|2412.3047
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LIMD1-AS1 ;
ROSE Overlap LIMD1 ;
ROSE Proximal SACM1L ; LIMD1-AS1 ;
ROSE Closest LIMD1-AS1 ;
Lasso ;
PreSTIGE ;
ABC LIMD1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269200475 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers