SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269101098
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-WT)
Genomic region: chr5:34655569-34688404
Size: 32835
Super-enhancer rank 1098
Number of SE elements: 5
ChIP density(Case|Control): 27768.5595|4284.9675
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RAI14 ;
ROSE Overlap RAI14 ;
ROSE Proximal RAI14 ;
ROSE Closest RAI14 ;
Lasso ;
PreSTIGE ;
ABC RAI14 ; TTC23L ; SKP2 ; LMBRD2 ; LOC100506406 ; RXFP3 ; SLC45A2 ; C1QTNF3 ; RAD1 ; BRIX1 ; DNAJC21 ; PRLR ; SPEF2 ; IL7R ; CAPSL ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269101098 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers