SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269101056
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-WT)
Genomic region: chr9:4827078-4843004
Size: 15926
Super-enhancer rank 1056
Number of SE elements: 4
ChIP density(Case|Control): 25975.306|1868.1198
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RCL1 ;
ROSE Overlap RCL1 ;
ROSE Proximal MIR101-2 ;
ROSE Closest RCL1 ;
Lasso ;
PreSTIGE ;
ABC AK3 ; RCL1 ; JAK2 ; SPATA6L ; CDC37L1-AS1 ; CDC37L1 ; PLPP6 ; INSL4 ; PLGRKT ; CD274 ; RIC1 ; ERMP1 ; RANBP6 ; SLC1A1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269101056 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers