SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269100917
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-WT)
Genomic region: chr1:77999145-78010795
Size: 11650
Super-enhancer rank 917
Number of SE elements: 5
ChIP density(Case|Control): 27556.91|1315.285
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DNAJB4 ;
ROSE Overlap DNAJB4 ;
ROSE Proximal GIPC2 ; FUBP1 ;
ROSE Closest DNAJB4 ;
Lasso ;
PreSTIGE ;
ABC ZZZ3 ; AK5 ; PIGK ; IFI44L ; ST6GALNAC3 ; MSH4 ; RABGGTB ; ACADM ; ST6GALNAC5 ; IFI44 ; PTGFR ; USP33 ; MGC27382 ; GIPC2 ; FUBP1 ; DNAJB4 ; MIGA1 ; NEXN ; NEXN-AS1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269100917 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers