SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269100539
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-WT)
Genomic region: chr5:891692-921555
Size: 29863
Super-enhancer rank 539
Number of SE elements: 13
ChIP density(Case|Control): 39239.982|3362.5738
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TRIP13 ;
ROSE Overlap TRIP13 ; BRD9 ;
ROSE Proximal ZDHHC11 ;
ROSE Closest TRIP13 ;
Lasso ;
PreSTIGE ;
ABC BRD9 ; TRIP13 ; LOC100996325 ; CEP72 ; CLPTM1L ; LPCAT1 ; MRPL36 ; NDUFS6 ; HRAT5 ; SLC9A3-AS1 ; PDCD6 ; EXOC3-AS1 ; EXOC3 ; PP7080 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269100539 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers