SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269100344
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-WT)
Genomic region: chr3:45608245-45677561
Size: 69316
Super-enhancer rank 344
Number of SE elements: 15
ChIP density(Case|Control): 51661.2148|6446.388
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LIMD1-AS1 ;
ROSE Overlap LIMD1 ;
ROSE Proximal SACM1L ; LIMD1-AS1 ;
ROSE Closest LIMD1-AS1 ;
Lasso ;
PreSTIGE ;
ABC LIMD1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269100344 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers