SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269100308
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-WT)
Genomic region: chr5:140290820-140346586
Size: 55766
Super-enhancer rank 308
Number of SE elements: 10
ChIP density(Case|Control): 53730.541|4461.28
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PFDN1 ;
ROSE Overlap PFDN1 ; HBEGF ;
ROSE Proximal SLC4A9 ;
ROSE Closest PFDN1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269100308 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers