SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_269100275
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-WT)
Genomic region: chr9:4257903-4302906
Size: 45003
Super-enhancer rank 275
Number of SE elements: 7
ChIP density(Case|Control): 56397.7596|4819.8213
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GLIS3 ;
ROSE Overlap GLIS3 ;
ROSE Proximal ;
ROSE Closest GLIS3 ;
Lasso ;
PreSTIGE ;
ABC PDCD1LG2 ; RIC1 ; ERMP1 ; KIAA2026 ; RANBP6 ; CD274 ; PLGRKT ; INSL4 ; JAK2 ; RCL1 ; AK3 ; CDC37L1 ; CDC37L1-AS1 ; SPATA6L ; PLPP6 ; SLC1A1 ; GLIS3-AS1 ; RFX3 ; PUM3 ; VLDLR-AS1 ; VLDLR ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269100275 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers