SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269100055
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: CIC-KO1 (IDH1-WT)
Genomic region: chr3:45081587-45183747
Size: 102160
Super-enhancer rank 55
Number of SE elements: 17
ChIP density(Case|Control): 107707.288|10318.16
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CDCP1 ;
ROSE Overlap CDCP1 ;
ROSE Proximal TMEM158 ;
ROSE Closest CDCP1 ;
Lasso ;
PreSTIGE ;
ABC LARS2-AS1 ; LARS2 ; TMEM158 ; CDCP1 ; ZDHHC3 ; CLEC3B ; EXOSC7 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269100055 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers