SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_238701690
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Tissue
Tissue type: tumor
Biosample name: 924-1
Genomic region: chr3:12175098-12198928
Size: 23830
Super-enhancer rank 1690
Number of SE elements: 13
ChIP density(Case|Control): 13595.015|2816.706
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TIMP4 ;
ROSE Overlap SYN2 ;
ROSE Proximal TIMP4 ;
ROSE Closest TIMP4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_238701690 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers