SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_238701052
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Tissue
Tissue type: tumor
Biosample name: 924-1
Genomic region: chr3:12135505-12159838
Size: 24333
Super-enhancer rank 1052
Number of SE elements: 9
ChIP density(Case|Control): 17281.2966|2878.5939
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TIMP4 ;
ROSE Overlap TIMP4 ; SYN2 ;
ROSE Proximal ;
ROSE Closest TIMP4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_238701052 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers