SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_231700540
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: stomach
Biosample name: SNU1750 shLuc
Genomic region: chr12:54015573-54020720
Size: 5147
Super-enhancer rank 540
Number of SE elements: 1
ChIP density(Case|Control): 34348.5045|3218.4191
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXC4 ;
ROSE Overlap HOXC4 ; HOXC6 ; HOXC5 ;
ROSE Proximal HOXC8 ; HOTAIR ; HOXC4 ; HOXC11 ; HOXC-AS2 ; HOXC5 ; HOXC6 ; HOXC9 ; HOXC-AS1 ; MIR196A2 ; FLJ12825 ; HOXC10 ; MIR615 ; HOXC-AS3 ;
ROSE Closest HOXC4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_231700540 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers