SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_230200872
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: stomach
Biosample name: RERFGC1B
Genomic region: chr19:39427775-39438470
Size: 10695
Super-enhancer rank 872
Number of SE elements: 6
ChIP density(Case|Control): 22055.229|2164.668
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPS16 ;
ROSE Overlap RPS16 ; PLEKHG2 ;
ROSE Proximal TIMM50 ; ZFP36 ; SUPT5H ; MED29 ; PAF1 ; MIR4530 ;
ROSE Closest RPS16 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_230200872 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers