SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_227400030
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Placenta villous core
Biosample name: P42_10wks_M
Genomic region: chr4:40550881-40632307
Size: 81426
Super-enhancer rank 30
Number of SE elements: 34
ChIP density(Case|Control): 41763.3954|6090.6648
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RBM47 ;
ROSE Overlap RBM47 ;
ROSE Proximal RBM47 ; MIR4802 ;
ROSE Closest RBM47 ;
Lasso ;
PreSTIGE ;
ABC NSUN7 ; RBM47 ; LOC101060498 ; CHRNA9 ; WDR19 ; FAM114A1 ; RPL9 ; LIAS ; SLC30A9 ; TMEM33 ; LIMCH1 ; APBB2 ; LOC344967 ; N4BP2 ; PDS5A ; LOC401127 ; UBE2K ; SMIM14 ; UGDH-AS1 ; UGDH ; TLR6 ; TLR1 ; RFC1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_227400030 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers