SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_227100478
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Placenta villous core
Biosample name: P32_39wks_F
Genomic region: chr3:54943747-55006582
Size: 62835
Super-enhancer rank 478
Number of SE elements: 27
ChIP density(Case|Control): 40503.441|5265.573
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LRTM1 ;
ROSE Overlap LRTM1 ; CACNA2D3 ;
ROSE Proximal LRTM1 ; CACNA2D3-AS1 ;
ROSE Closest LRTM1 ;
Lasso ;
PreSTIGE ;
ABC CACNA2D3-AS1 ; WNT5A ; ERC2-IT1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_227100478 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers